Publications

ADAPT in SC Year 1 Publications

Chou T, Hoover A, Goldstein S, Greco-Henderson D, Martin C, Raynor H, Muth E, & Thomas J. (2024). An explanation for the accuracy of sensor-based measures of energy intake: Amount of food consumed matters more than dietary composition. Appetite, 194, 1–6. https://doi.org/10.1016/j.appet.2023.107176

Tang Z, Patyk A, Jolly J, Goldstein S., Thomas J, & Hoover A. (2024). Detecting eating episodes from wrist motion using daily pattern analysis. IEEE Journal of Biomedical and Health Informatics, 28(2), 1054–1065. https://doi.org/10.1109/JBHI.2023.3341077

Popp C, Wang C, Hoover A, Gomez L, Curran M, St-Jules D, Barua S, Sevick M, & Kleinberg S. (2024). Objective determination of eating occasion timing: Combining self-report, wrist motion, and continuous glucose monitoring to detect eating occasions in adults with prediabetes and obesity. Journal of Diabetes Science and Technology, 18(2), 266–272. https://doi.org/10.1177/19322968231197205

Indah, D., Mwakalonge, J., Comert, G., & Siuhi, S. (2024). Enhancing data efficiency for autonomous vehicles: Using data sketches for detecting driving anomalies. Machine Learning with Applications, 15, 1–9. https://doi.org/10.1016/j.mlwa.2024.100530

Chengula, T., Mwakalonge, J., Comert, G., & Siuhi, S. (2023). Improving road safety with ensemble learning: Detecting driver anomalies using vehicle inbuilt cameras. Machine Learning with Applications, 14, 1–10. https://doi.org/10.1016/j.mlwa.2023.100510

Wei, X., Ma, D., Ou, J., Song, G., Guo, J., Robertson, J., Wang, Y., Wang, Q., & Liu, C. (2024). Narrowing signal distribution by adamantane derivatization for amino acid identification using an α-hemolysin nanopore. Nano Letters, 24(5), 1494–1501. https://doi.org/10.1021/acs.nanolett.3c03593

Rajeoni, A., Pederson, B., Clair, D., Lessner, S., & Valafar, H. (2023). Automated measurement of vascular calcification in femoral endarterectomy patients using deep learning. Diagnostics, 13(21), 1–19. https://doi.org/10.3390/diagnostics13213363

Zhang, Z., Fan, H., Richardson, W., Gao, B., & Ye, T. (2023). Management of autofluorescence in formaldehyde-fixed myocardium: Choosing the right treatment. European Journal of Histochemistry, 67(4), 211–221. https://doi.org/10.4081/ejh.2023.3812

Fan, H., Xu, P., Chen, X., Li, Y., Zhang, Z., Hsu, J., Le, M., Ye, E., Gao, B., Demos, H., Yao, H., & Ye, T. (2023). Mask R-CNN provides efficient and accurate measurement of chondrocyte viability in the label-free assessment of articular cartilage. Osteoarthritis and Cartilage Open, 5(4), 1–7. https://doi.org/10.1016/j.ocarto.2023.100415

ADAPT IN SC Year 2 Publications

Chou T, Hoover AW, Goldstein SP, Greco-Henderson D, Martin CK, Raynor HA, Muth ER, & Thomas JG (2024). An explanation for the accuracy of sensor-based measures of energy intake: Amount of food consumed matters more than dietary composition. Appetite, 194, 107176. https://doi.org/10.1016/j.appet.2023.107176

Cheng R, Sun Y, Niyato D, Zhang L, Zhang L, & Imran M A (2025). A wireless AI-generated content (AIGC) provisioning framework empowered by semantic communication. IEEE Transactions on Mobile Computing, 24(3), 2137–2150. https://doi.org/10.1109/TMC.2024.3493375

Huang B, Coventry B, Borowska M T, Arhontoulis D C, Exposit M, Abedi M, Jude K M, Halabiya S F, Allen A, Cordray C, Goreshnik I, Ahlrichs M, Chan S, Tunggal H, DeWitt M, Hyams N, Carter L, Stewart L, Fuller D H, Mei Y, Garcia K C, & Baker D (2024). De novo design of miniprotein antagonists of cytokine storm inducers. Nature Communications, 15, 7064. https://doi.org/10.1038/s41467-024-50919-4

Tang Z, Patyk A, Jolly J, Goldstein S P, Thomas J G, & Hoover A (2024). Detecting eating episodes from wrist motion using daily pattern analysis. IEEE Journal of Biomedical and Health Informatics, 28(2), 1054–1065. https://doi.org/10.1109/JBHI.2023.3341077

Kelley J, Buchweitz N, Madden A, Fan H, Hepfer G, Kern M, Townsend D M, Ye T, Yao H, & Wu Y (2024). Effect of cigarette smoke exposure and cessation on regional diffusion properties in rat intervertebral discs. JOR Spine, 7(4), e70015. https://doi.org/10.1002/jsp2.70015

Lyu S, Sun Y, Guo L, Yuan X, Fang F, Zhang L, & Wang X (2024). Improving channel resilience for task-oriented semantic communications: A unified information bottleneck approach. IEEE Communications Letters, 1–1. https://doi.org/10.1109/LCOMM.2024.3466995

Hyams N A, Kerr C M, Arhontoulis D C, Ruddy J M, & Mei Y (2024). Improving human cardiac organoid design using transcriptomics. Scientific Reports, 14, 20147. https://doi.org/10.1038/s41598-024-61554-w

Zhang Z, Gao B Z, & Ye T (2024). In situ structural characterization of cardiomyocyte microenvironment by multimodal STED microscopy. Photonics, 11 (6), 533. https://doi.org/10.3390/photonics11060533

Li C, Wang L, Li K, Deng H, Wang Y, Chang L, Zhou P, Zeng J, Sun M, Jiang H, & Wang Q (2024). Machine-learning-enabled prognostic models for sepsis. Intelligent BioMedicine, 10, 100167. https://doi.org/10.1016/j.ibmed.2024.100167

Baminiwatte R, Torsu B, Scherbakov D, Mollalo A, Obeid J S, Alekseyenko A V, & Lenert L A (2025). Machine learning in healthcare citizen science: A scoping review. International Journal of Medical Informatics, 195, 105766. https://doi.org/10.1016/j.ijmedinf.2024.105766

Scherbakov D, Hubig N, Lenert L, Alekseyenko A, & Obeid J (2025). Natural language processing and social determinants of health in mental health research: AI-assisted scoping review. JMIR Mental Health, 12, e67192. https://doi.org/10.2196/67192

Popp C J, Wang C, Hoover A, Gomez L A, Curran M, St-Jules D E, Barua S, Sevick M A, & Kleinberg S (2024). Objective determination of eating occasion timing: Combining self-report, wrist motion, and continuous glucose monitoring to detect eating occasions in adults with prediabetes and obesity. Journal of Diabetes Science and Technology, 18(2). https://doi.org/10.1177/19322968231197205

Zhang Z, Chen X, Richardson W, Gao B Z, Razi A, & Ye T (2024). Quantification of cardiac capillarization in basement-membrane-immunostained myocardial slices using Segment Anything Model. Scientific Reports, 14, 15344. https://doi.org/10.1038/s41598-024-65567-3

Sk M S, Mwangomo R, Daniel L, & Gilmore J (2025). Solution blow spinning: An emerging nanomaterials-based wound-care technology. Journal of Biomedical Materials Research Part B: Applied Biomaterials, 113, e35513. https://doi.org/10.1002/jbm.b.35513

Brennan C, Joly A G, Wang C-F, Xie T, O’Callahan B T, Crampton K, Teklu A, Shi L, Hu M, Zhang Q, Kuthirummal N, Suriya Arachchige H, Chaturvedi A, Zhang H, Mandrus D, Gong C, & Gong Y (2024). Strong surface-enhanced coherent phonon generation in van der Waals materials. The Journal of Physical Chemistry Letters, 15(42). https://doi.org/10.1021/acs.jpclett.4c02208

Museck I J, Brinton D L, & Dean J C (2024). The use of wearable sensors and machine learning methods to estimate biomechanical characteristics during standing posture or locomotion: A systematic review. Sensors, 24(22), 7280. https://doi.org/10.3390/s24227280

Tang X, & Hoover A (2025). Video-based intake gesture recognition using meal-length context. ACM Transactions on Computing for Healthcare, 6(2), Article 15. https://doi.org/10.1145/3709151

ADAPT in SC Year 3 Journal Publications

Knox S, Aghamoosa S, Heider P M, Cutty M, Wright A, Scherbakov D, Hood A, Nolin S A, & Obeid J S (2025). AI approaches for phenotyping Alzheimer’s disease and related dementias using electronic health records. Alzheimer’s & Dementia, 11, e70089. https://doi.org/10.1002/trc2.70089

Tanarsuwongkul S, Liu J, Spaulding M, Perea-Schmittle K, Lohman M, & Wang Q (2025). Associations between social determinants of health and mental health disorders among U.S. population: A cross-sectional study. Epidemiology and Psychiatric Sciences, 34, e4. https://doi.org/10.1017/S2045796024000866

Bagheri Rajeoni A, Pederson B, Lessner S M, & Valafar H (2025). Automated aneurysm boundary detection and volume estimation using deep learning. Diagnostics, 15(14), 1804. https://doi.org/10.3390/diagnostics15141804

Dinkel Z, Baker A, Akins A, King K L, Harrington M, Kunkel D, Gao Z, Ye T, & Dunn H (2025). Collagen architecture in triple negative breast cancer. PLOS ONE, 20(5), e0324655. https://doi.org/10.1371/journal.pone.0324655

Sun S, Li J, & Wang Q (2025). Cross-coupling in hydrodynamic phase-field models for nonisothermal binary fluids. Chaos, Solitons & Fractals, 195, 116286. https://doi.org/10.1016/j.chaos.2025.116286

Gu X, & Wang Q (2025). Energy-stable swarm-based inertial algorithms for optimization. Journal of Scientific Computing. https://doi.org/10.48550/arXiv.2507.09909

Pan G, Ma H, Helke K, Pullen W M, Mukherji M, Eldridge D, Chen P, Mueller D, Sun S, Wua Y, Ye T, Yao H, & Wang S (2025). Four-month evaluation of vitrified meniscal allograft transplantation in a pig model. https://doi.org/10.1016/j.cryobiol.2025.105353

Salauddin S K M, Jamison A, & Gilmore J (2026). Investigation of structure-processing-property relationships in solution blow-spun PLA nanofiber mats. Macromolecular Materials and Engineering, 311(3), e70203. https://doi.org/10.1002/mame.70203

Cao X, Wang D, He J X, Hou J, Li J, Jiang H, & Wang Q (2025). Machine learning glucose forecasting models for septic patients. Scientific Reports, 15, 40432. https://doi.org/10.1038/s41598-025-23057-0

Smith A, Jerzmanowski K, Raynor P, Corbett C F, & Valafar H (2025). Monitoring opioid-use-disorder treatment adherence using smartwatch gesture recognition. Sensors, 25(8), 2443. https://doi.org/10.3390/s25082443

Chen T, Quinn Z, Mishra K, O’Connor E C, Silver S E, Zhang Y, Valencia M J, Mei Y, Behmoaras, Ferreira L M R, & Chatterjee P (2026). moPPIt: De novo generation of motif-specific and functionally active peptide binders via discrete flow matching. bioRxiv. https://doi.org/10.1101/2024.07.31.606098

Wang M, Deng Y, Wang Y, Chen J, Li X, Du P, Zheng X, Qu J, Gao B, Peng X, & Shao Y (2025). Analytical Chemistry, 97(8), 4379–4386. https://doi.org/10.1021/acs.analchem.4c05470

Chen P, Chai J, Soundararajan A, Hepfer R G, Kheyfets B, Hu J, Alshanqiti I, Raman S, Tosa I, Huh J T, Yee M, Damon B J, Wang S, Kim Y S, Chung M K, Embree M C, Lee J S, Ye T, & Yao H (2026). Multiscale 3D whole joint cellular and molecular mapping reveals disease-specific neurovascular plasticity underlying the structure-pain relationship. Advanced Science, 13(1), e11226. https://doi.org/10.1002/advs.202511226

King K L, Abdollahi H, Dinkel Z, Akins A, Valafar H, & Dunn H (2025). Pilot study: Initial investigation suggests differences in EMT-associated gene expression in breast tumor regions. Computational and Structural Biotechnology Journal, 27, 548–555. https://doi.org/10.1016/j.csbj.2025.01.027

Turner-McGrievy G M, Delgado-Díaz D C, DuBois K E, Aydin H Z, Monroe C M, Kim Y, Hardin J, Wilcox S, & Valafar H (2025). The mLIFE randomized trial examining the impact of gamifying social support provision for weight loss. Obesity, 33(8), 1447–1456. https://doi.org/10.1002/oby.24330

Brown A L, Lian X, & Wang Q (2026). The structure, pathogenesis, and inhibition of the p53-MDM2 pathway. Cancers, 18(4), 546. https://doi.org/10.3390/cancers18040546

Wang M, Wang L, Guo Y, Wang Y, Chen, Weng X, Li X, Du P, Qu J, Gao B, Yan W, & Shao Y (2025). Two-photon scanning structured illumination super-resolution volume microscopy utilizing a synthetic beam by superposing a nondiffracting Airy beam and a Gaussian beam. ACS Photonics, 12. https://doi.org/10.1021/acsphotonics.5c00323

Knight H L, Schonhaut E B, Jacobs C J, & Dean J C (2025). Validity of poststroke gait spatiotemporal and joint excursion metrics between inertial measurement units and a marker-based system. Journal of Applied Biomechanics, 41(6), 528–535. https://doi.org/10.1123/jab.2025-0098